Software Projects

ARIA

Image Ambiguous Restraints for Iterative Assignment (ARIA) Portal: http://aria.pasteur.fr

ARIA (Ambiguous Restraints for Iterative Assignment) is a software for automated NOE assignment and NMR structure calculation. It speeds up and automatizes the assignment process through the use of an iterative structure calculation scheme. Additionally, a refinement in explicit water improves the quality of the calculated structures, validation tests help spectroscopists to judge the quality of the final structures, and the support of the CCPN data model simplifies the exchange of information with other NMR software packages.

ARIA Publications

  • Bardiaux B, Malliavin TE, Nilges M.
  • "ARIA for solution and solid-state NMR."
    Protein NMR Techniques, 3rd edition, A. Shekhtman, and D.S. Burz, eds (2012) [Editor site]
  • Bardiaux B, Bernard A, Rieping W, Habeck M, Malliavin TE, Nilges M.
  • "Influence of different assignment conditions on the determination of symmetric homodimeric structures with ARIA."
    Proteins. 2009 May 15;75(3):569-85. [Pubmed]
  • Bardiaux B, Bernard A, Rieping W, Habeck M, Malliavin TE, Nilges M.
  • "Graphical analysis of NMR structural quality and interactive contact map of NOE assignments in ARIA."
    BMC Struct Biol. 2008 Jun 5;8:30. [Pubmed][Full text]
  • Rieping W, Habeck M, Bardiaux B, Bernard A, Malliavin TE, Nilges M.
  • "ARIA2: automated NOE assignment and data integration in NMR structure calculation."
    Bioinformatics. 2007 Feb 1;23(3):381-2. [Pubmed]

All ARIA publications

ARIAweb

Image ARIA web server http://ariaweb.pasteur.fr

The ARIAweb server provides access to the main ARIA software functionalities (NMR data conversion and structure calculation). In addition, structure calculation results can be easily visualised, with a dedicated molecular viewer and graphical displays of various validation statistics.

ARIAweb Publications

  • Allain F, Mareuil F, Ménager H, Nilges M, Bardiaux B.
  • "ARIAweb: a server for automated NMR structure calculation."
    Nucleic Acids Res. 2020 Jul 2;48(W1):W41-W47 [Pubmed]

Extend-NMR

Extend-NMR: Extending NMR for Functional and Structural Genomics : http://www.extend-nmr.eu

Extend-NMR is a European Sixth Framework project that aims to bring together software for macromolecular NMR into a single well-connected pipeline.

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